Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948154.1_cds_XP_016489502.1_80017
CDS Infomation

[gene=LOC107809399] [db_xref=GeneID:107809399] [protein=putative lysine-specific demethylase JMJ16 isoform X3] [protein_id=XP_016489502.1] [location=join(52854..52868,52966..53043,53352..53825,53926..54147,54392..54550,55703..56071,57700..58386)] [gbkey=CDS]
Sequence

ATGTTTGGTTTCAAGGTTATTGCAAGATGTCGTCCAGAATTGGCACGCATACCTTCACTT
GAAGAGGCTCCTGTATTCCATCCTAGTGAAGAGGAATTTGAAGATACTCTGAAGTATGTA
GCGAGCATCCTTCCACATATCAAGCACTATGGAATATGTCGTATCGTTCCTCCCTCTTCC
TGGAAACCACCTAGCCGCATTGAAGAAGAGAGCACAGTATATGGAGTCAACACCCATATC
CAGCGCACTAGTGACCTCCAGAATCTGTTTTTCAAGAAAAGGCTTGAGGCAGCCTGTACA
AGGACGAATAATAAACAGCAGAAAATCCTAAGTAGGAAGTCAGATTTTGGACACGGCATT
GAACGTAAAGAATTTGGCTGCTGTAATGAACACTTTGAATTTGAAAATGGGCCAAAGCTA
ATGCTGAAATATTTCAAGCATTACGCTGATCATTTCAAGAAGCAGTACTTTGTCAAGGAA
GATCAGATTACGGCGTCAGAACCATCAATTCAGGATATCGAAGGGGAATACTGGAGGATT
ATTGAGAATCCAACTGAAGAAATTGAGGTTCTCCAGGGAACTAGTGCGGAACTTAAAGCA
ACTGAAAGCGGTTTCCCACATGAACGGGATGTAACTAGTCGTCGTCGTCCACAATATGTA
GAATCAGGTTGGAACTTGAATAATACCCCTAAGCTTCAAGATTCTCTTCTCCGTTTTGGA
AGTTGTGAGAGTTCCTCTATTTTGCTTCCTCGCCTCTCCATTGGAATGTGTTTCTCATCA
AATCTATGGAGAATTGAAGAGCACCACTTGTATTTACTATCTTACATACAATTTGGTGCC
CCAAAAATATTTTATGGGGTTCCCGGGAGTTATCGTTGCAAGTTTGAGGAAGCTGTCAAG
AAGCATCTGCCGCAGTTGTCAGCACATCCTTGTTTGCTTCAAAACACTGCCTTTCAGTTT
TCTCCTTCTATATTGACTTCAGAGGGAATACCTGTTTATCGTTGTGTGCAAAATCCAAAG
GAATTTGTTCTCATTCTCCCTGGAGCATACCATGCACATGTTGATAGCGGCTTTAATTGT
TCCGAAGCAGTAAATTTTGCTCCCTTTGACTGGTTACCACACGGCCAGAATGCTGTAGAA
CTGTATTCTGAGCAGGGCAGAAAGACATCAATCTCCTATGATAAGCTGTTGTTTGAAGCA
GCCACAGAAGGAATTAGGTCTTTAGCGGAACTTCCGCTGCTACACAAGAAATCTTTTGAT
TATTTAAAATGGAGAGCAGTTTGTCGGAGCACTGGGATTTTGACAAAAGCACTTAAGTCA
CGGTTTGCCACTGAAGTGAGAAGACGCAAATATATGTGTGCTTCTCTTGAATCGCGAAAG
ATGGAGGATGACTTTTGTGCGACAGTCAAACGGGAGTGCCCTATATGCTACTATGATCTA
TACCTTTCCGCCATTGGCTGTAAATGTTCTCCATATAAATATACTTGTCTTCTTCATGCC
AAGCAGCTATGTTCTTGTGCATGGAGTGAGAAGTATTTGCTTATACGGTACAAAATAGAT
GAGTTGAGCATCATGGTTGAAGCTTTGGATGGGAAGGTAAGTGCAGTTCATAAGTGGGCA
AAAGAAAAACTTGGATTGCCTGTGTCCGACATCTCTAAAGATTCCAGCAAGGATGGAATG
AAGGTGAAATCAGAGTCCGGACAGTCATTGGATATTGAACAGGATAGGAAAGAAGAGGTG
TCTATTCCTTCAGTTGGTCCAAGTGCTAGAACAAATAATTTGAATCGGGTATCTGGTTCG
TGGGATGGATTGAGTCATTGGCCACAATCAAAAGGAATTGTTAATGATAAGATTGAAGTT
TTATTCCCAAAAATTTCACAGCATGCTACTGTTGGTAAAAATATTATGACCTCCTCTTCC
AATACAGTTCTCAAGAAGCATCTTGCACTGGAGTCTTCGTCTACTAAGAGAAGTGTGATT
ATTCTTAGTGATGACGAGAATTAG

Peptide Sequence

PEP ID

XP_016489502.1
PEP Infomation

PREDICTED: putative lysine-specific demethylase JMJ16 isoform X3 [Nicotiana tabacum]
Sequence

MFGFKVIARCRPELARIPSLEEAPVFHPSEEEFEDTLKYVASILPHIKHYGICRIVPPSS
WKPPSRIEEESTVYGVNTHIQRTSDLQNLFFKKRLEAACTRTNNKQQKILSRKSDFGHGI
ERKEFGCCNEHFEFENGPKLMLKYFKHYADHFKKQYFVKEDQITASEPSIQDIEGEYWRI
IENPTEEIEVLQGTSAELKATESGFPHERDVTSRRRPQYVESGWNLNNTPKLQDSLLRFG
SCESSSILLPRLSIGMCFSSNLWRIEEHHLYLLSYIQFGAPKIFYGVPGSYRCKFEEAVK
KHLPQLSAHPCLLQNTAFQFSPSILTSEGIPVYRCVQNPKEFVLILPGAYHAHVDSGFNC
SEAVNFAPFDWLPHGQNAVELYSEQGRKTSISYDKLLFEAATEGIRSLAELPLLHKKSFD
YLKWRAVCRSTGILTKALKSRFATEVRRRKYMCASLESRKMEDDFCATVKRECPICYYDL
YLSAIGCKCSPYKYTCLLHAKQLCSCAWSEKYLLIRYKIDELSIMVEALDGKVSAVHKWA
KEKLGLPVSDISKDSSKDGMKVKSESGQSLDIEQDRKEEVSIPSVGPSARTNNLNRVSGS
WDGLSHWPQSKGIVNDKIEVLFPKISQHATVGKNIMTSSSNTVLKKHLALESSSTKRSVI
ILSDDEN

Transcript Sequence

Gene sequence data has not been registered.